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Ogün AdebaliFaculty of Engineering and Natural SciencesFaculty Member(216) 568 7043oadebali@sabanciuniv.edu
Jobs

Faculty Member


Areas of Interest

Computational Genomics, Protein Informatics, Molecular Evolution, DNA Damage and Repair

Memberships

The Ecology and Evolutionary Biology Society of Turkey Molecular Biology Association

Article
Book Section / Chapter
Publications Prior to SU
  1. Yang Y., Adebali O., Wu G., Selby C.P., Rashid N., Hogenesch J.B., Sancar A.* (2018) Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues. PNAS, 21(115), E4777-E4785.
  2. Oztas O., Selby C.P., Sancar A.*, Adebali O.* (2018) Genome-wide Excision Repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns.  Nature Communications, 9(1), 1503.
  3. Li W., Adebali O., Yang Y., Selby C.P., Sancar A.* (2018) Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.  PNAS, 115(15), E3408-E3415.
  4. Adebali O., Sancar A.*, Selby C.P.* (2017) Mfd translocase is necessary and sufficient for transcription-coupled repair in Escherichia coli. The Journal of Biological Chemistry, 292(45), 18386-18391.
  5. Hu J., Selby C.P., Adar S., Adebali O., Sancar A.* (2017) Molecular mechanism of DNA excision repair and excision repair maps of the human and E. coli genomes.The Journal of Biological Chemistry, 292(38), 15588-15597.
  6. Hu J.#, Adebali O.#, Adar S., Sancar A.* (2017) Dynamic maps of UV damage formation and repair. PNAS, 114(26), 6758-6763.
  7. Li W., Hu J., Adebali O., Adar S., Yang Y., Chiou Y., Sancar A.* (2017) Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene. PNAS, 114(26), 6752-6757.
  8. Adebali O., Petukh M., Reznik A., Tishkov A., Upadhyay A., Zhulin I.B.* (2017) Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility. Journal of Bacteriology, 199(18), e00218-17.
  9. Adebali O., Chiou Y., Hu J., Sancar A.*, Selby C.P.* (2017) Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase. PNAS, 114(11), E2116-E2125.
  10. Adebali O.*, Zhulin I.B. (2016)  Aquerium: a web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree.  Proteins, 85(1), 72-77.
  11. Upadhyay A.A., Fleetwood A.D., Adebali O., Finn R., Zhulin I.B.* (2016) Cache domains are dominant extracellular sensors for signal transduction in prokaryotes. PLOS Computational Biology, 12(4).
  12. Adebali O., Reznik A.O., Ory D.S., Zhulin, I.B.* (2016) Establishing the precise evolutionary history of a gene improves predicting disease-causing missense mutations. Genetics in Medicine, 18(10), 1029-1036.
  13. Adebali O.*, Ortega D.R., Zhulin I.B.* (2015) CDvist: a webserver for identification and visualization of conserved domains in protein sequences. Bioinformatics, 31(9), 1475–1477.

# Equal Contribution | * Corresponding Author